IL_8XSZ_034

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

8XSZ|1|L5|A|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_034 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2291

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

8XSZ|1|L5|A|723
8XSZ|1|L5|C|724
*
8XSZ|1|L5|G|942
8XSZ|1|L5|A|943
8XSZ|1|L5|A|944
8XSZ|1|L5|U|945

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7