3D structure

PDB id
8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AAGG*CAGCAGCACU
Length
14 nucleotides
Bulged bases
8XSZ|1|L5|A|932, 8XSZ|1|L5|C|934, 8XSZ|1|L5|C|936
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8XSZ|1|L5|A|732
8XSZ|1|L5|A|733
8XSZ|1|L5|G|734
8XSZ|1|L5|G|735
*
8XSZ|1|L5|C|928
8XSZ|1|L5|A|929
8XSZ|1|L5|G|930
8XSZ|1|L5|C|931
8XSZ|1|L5|A|932
8XSZ|1|L5|G|933
8XSZ|1|L5|C|934
8XSZ|1|L5|A|935
8XSZ|1|L5|C|936
8XSZ|1|L5|U|937

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LM
60S ribosomal protein L14
Chain LS
60S ribosomal protein L18a

Coloring options:

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