IL_8XSZ_069

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCGCAGACCCGACGCGCCACG*CG

Length

24 nucleotides

Bulged bases

8XSZ|1|L5|G|1708, 8XSZ|1|L5|C|1717, 8XSZ|1|L5|C|1718

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSZ|1|L5|C|1694
8XSZ|1|L5|U|1695
8XSZ|1|L5|C|1696
8XSZ|1|L5|G|1697
8XSZ|1|L5|C|1698
8XSZ|1|L5|A|1699
8XSZ|1|L5|G|1700
8XSZ|1|L5|A|1701
8XSZ|1|L5|C|1702
8XSZ|1|L5|C|1703
8XSZ|1|L5|C|1704
8XSZ|1|L5|G|1705
8XSZ|1|L5|A|1706
8XSZ|1|L5|C|1707
8XSZ|1|L5|G|1708
8XSZ|1|L5|C|1715
8XSZ|1|L5|G|1716
8XSZ|1|L5|C|1717
8XSZ|1|L5|C|1718
8XSZ|1|L5|A|1719
8XSZ|1|L5|C|1720
8XSZ|1|L5|G|1721
*
8XSZ|1|L5|C|1841
8XSZ|1|L5|G|1842

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29