IL_8XSZ_074
3D structure
- PDB id
- 8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSZ_074 not in the Motif Atlas
- Geometric match to IL_5TBW_041
- Geometric discrepancy: 0.1252
- The information below is about IL_5TBW_041
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
8XSZ|1|L5|A|1746
8XSZ|1|L5|U|1747
8XSZ|1|L5|U|1748
8XSZ|1|L5|A|1749
*
8XSZ|1|L5|U|1781
8XSZ|1|L5|U|1782
8XSZ|1|L5|C|1783
8XSZ|1|L5|U|1784
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CD
- Transfer RNA; tRNA
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LI
- Large ribosomal subunit protein uL16
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