IL_8XSZ_098

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

8XSZ|1|L5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_098 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.2051

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8XSZ|1|L5|U|2415
8XSZ|1|L5|G|2416
8XSZ|1|L5|A|2417
8XSZ|1|L5|A|2418
8XSZ|1|L5|C|2419
*
8XSZ|1|L5|G|2427
8XSZ|1|L5|A|2428
8XSZ|1|L5|A|2429

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ll

60S ribosomal protein L39