3D structure

PDB id
8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAC*GGCC
Length
7 nucleotides
Bulged bases
8XSZ|1|S2|C|548
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8XSZ_214 not in the Motif Atlas
Geometric match to IL_4V9F_097
Geometric discrepancy: 0.3997
The information below is about IL_4V9F_097
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_68118.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
27

Unit IDs

8XSZ|1|S2|G|535
8XSZ|1|S2|A|536
8XSZ|1|S2|C|537
*
8XSZ|1|S2|G|546
8XSZ|1|S2|G|547
8XSZ|1|S2|C|548
8XSZ|1|S2|C|549

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SJ
40S ribosomal protein S9
Chain Se
40S ribosomal protein S30

Coloring options:


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