IL_8XSZ_214
3D structure
- PDB id
- 8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAC*GGCC
- Length
- 7 nucleotides
- Bulged bases
- 8XSZ|1|S2|C|548
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSZ_214 not in the Motif Atlas
- Geometric match to IL_4V9F_097
- Geometric discrepancy: 0.3997
- The information below is about IL_4V9F_097
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_68118.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 27
Unit IDs
8XSZ|1|S2|G|535
8XSZ|1|S2|A|536
8XSZ|1|S2|C|537
*
8XSZ|1|S2|G|546
8XSZ|1|S2|G|547
8XSZ|1|S2|C|548
8XSZ|1|S2|C|549
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- 40S ribosomal protein S30
Coloring options: