IL_8XSZ_279

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCGGCCCGG*UCCCCC

Length

16 nucleotides

Bulged bases

8XSZ|1|L5|C|501, 8XSZ|1|L5|C|502, 8XSZ|1|L5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSZ|1|L5|G|496
8XSZ|1|L5|G|497
8XSZ|1|L5|C|498
8XSZ|1|L5|G|499
8XSZ|1|L5|G|500
8XSZ|1|L5|C|501
8XSZ|1|L5|C|502
8XSZ|1|L5|C|503
8XSZ|1|L5|G|504
8XSZ|1|L5|G|505
*
8XSZ|1|L5|U|653
8XSZ|1|L5|C|654
8XSZ|1|L5|C|655
8XSZ|1|L5|C|656
8XSZ|1|L5|C|657
8XSZ|1|L5|C|658

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a