IL_8XSZ_284

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAUGUCAAAGU*AAUGAAGCGCG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSZ|1|L5|C|3708
8XSZ|1|L5|U|3709
8XSZ|1|L5|G|3710
8XSZ|1|L5|A|3711
8XSZ|1|L5|A|3712
8XSZ|1|L5|U|3713
8XSZ|1|L5|G|3714
8XSZ|1|L5|U|3715
8XSZ|1|L5|C|3716
8XSZ|1|L5|A|3717
8XSZ|1|L5|A|3718
8XSZ|1|L5|A|3719
8XSZ|1|L5|G|3720
8XSZ|1|L5|U|3721
*
8XSZ|1|L5|A|3732
8XSZ|1|L5|A|3733
8XSZ|1|L5|U|3734
8XSZ|1|L5|G|3735
8XSZ|1|L5|A|3736
8XSZ|1|L5|A|3737
8XSZ|1|L5|G|3738
8XSZ|1|L5|C|3739
8XSZ|1|L5|G|3740
8XSZ|1|L5|C|3741
8XSZ|1|L5|G|3742

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a

Chain S2

Small subunit ribosomal RNA; SSU rRNA