IL_8XSZ_289

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCUCCUCUCCCACUU*AUGCCGACG

Length

25 nucleotides

Bulged bases

8XSZ|1|S2|C|131, 8XSZ|1|S2|U|132, 8XSZ|1|S2|C|133, 8XSZ|1|S2|C|134, 8XSZ|1|S2|U|135, 8XSZ|1|S2|C|136, 8XSZ|1|S2|U|137, 8XSZ|1|S2|C|138, 8XSZ|1|S2|C|139, 8XSZ|1|S2|C|142, 8XSZ|1|S2|U|143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSZ|1|S2|C|129
8XSZ|1|S2|G|130
8XSZ|1|S2|C|131
8XSZ|1|S2|U|132
8XSZ|1|S2|C|133
8XSZ|1|S2|C|134
8XSZ|1|S2|U|135
8XSZ|1|S2|C|136
8XSZ|1|S2|U|137
8XSZ|1|S2|C|138
8XSZ|1|S2|C|139
8XSZ|1|S2|C|140
8XSZ|1|S2|A|141
8XSZ|1|S2|C|142
8XSZ|1|S2|U|143
8XSZ|1|S2|U|144
*
8XSZ|1|S2|A|175
8XSZ|1|S2|U|176
8XSZ|1|S2|G|177
8XSZ|1|S2|C|178
8XSZ|1|S2|C|179
8XSZ|1|S2|G|180
8XSZ|1|S2|A|181
8XSZ|1|S2|C|182
8XSZ|1|S2|G|183

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6