IL_8XT0_014
3D structure
- PDB id
- 8XT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCCACAG*CCCCUUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT0_014 not in the Motif Atlas
- Geometric match to IL_5XWG_002
- Geometric discrepancy: 0.3361
- The information below is about IL_5XWG_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74768.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8XT0|1|L1|C|387
8XT0|1|L1|C|388
8XT0|1|L1|C|389
8XT0|1|L1|A|390
8XT0|1|L1|C|391
8XT0|1|L1|A|392
8XT0|1|L1|G|393
*
8XT0|1|L1|C|406
8XT0|1|L1|C|407
8XT0|1|L1|C|408
8XT0|1|L1|C|409
8XT0|1|L1|U|410
8XT0|1|L1|U|411
8XT0|1|L1|G|412
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain L6
- Large ribosomal subunit protein mL63
- Chain La
- Large ribosomal subunit protein bL27m
- Chain Ld
- Large ribosomal subunit protein uL30m
- Chain Ll
- Large ribosomal subunit protein mL38
- Chain Lv
- Large ribosomal subunit protein mL48
- Chain Lz
- 39S ribosomal protein L52, mitochondrial
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