IL_8XT0_025

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

8XT0|1|L1|G|985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT0_025 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.0965

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8XT0|1|L1|A|803
8XT0|1|L1|C|804
8XT0|1|L1|U|805
8XT0|1|L1|C|806
8XT0|1|L1|G|807
8XT0|1|L1|G|808
*
8XT0|1|L1|C|983
8XT0|1|L1|U|984
8XT0|1|L1|G|985
8XT0|1|L1|U|986

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LN

Large ribosomal subunit protein uL14m

Chain LS

Large ribosomal subunit protein bL19m