IL_8XT0_029

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UUAA

Length

6 nucleotides

Bulged bases

8XT0|1|L1|U|893, 8XT0|1|L1|A|894

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT0_029 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.1094

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8XT0|1|L1|U|882
8XT0|1|L1|G|883
*
8XT0|1|L1|U|892
8XT0|1|L1|U|893
8XT0|1|L1|A|894
8XT0|1|L1|A|895

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m