IL_8XT0_031

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUAAUCACUUG*CCUG

Length

16 nucleotides

Bulged bases

8XT0|1|L1|A|931, 8XT0|1|L1|U|932, 8XT0|1|L1|U|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT0|1|L1|C|927
8XT0|1|L1|A|928
8XT0|1|L1|U|929
8XT0|1|L1|A|930
8XT0|1|L1|A|931
8XT0|1|L1|U|932
8XT0|1|L1|C|933
8XT0|1|L1|A|934
8XT0|1|L1|C|935
8XT0|1|L1|U|936
8XT0|1|L1|U|937
8XT0|1|L1|G|938
*
8XT0|1|L1|C|954
8XT0|1|L1|C|955
8XT0|1|L1|U|956
8XT0|1|L1|G|957

Current chains

Chain L1

16s rRNA

Nearby chains

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain Sn

Small ribosomal subunit protein mS38