IL_8XT0_046

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

8XT0|1|L1|G|1393, 8XT0|1|L1|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT0_046 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1486

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

8XT0|1|L1|A|1327
8XT0|1|L1|U|1328
8XT0|1|L1|C|1329
*
8XT0|1|L1|G|1391
8XT0|1|L1|U|1392
8XT0|1|L1|G|1393
8XT0|1|L1|A|1394
8XT0|1|L1|U|1395

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain Lf

Large ribosomal subunit protein bL32m