IL_8XT0_066

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

8XT0|1|S1|A|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT0_066 not in the Motif Atlas

Geometric match to IL_2QUX_002

Geometric discrepancy: 0.232

The information below is about IL_2QUX_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8XT0|1|S1|U|191
8XT0|1|S1|A|192
*
8XT0|1|S1|U|203
8XT0|1|S1|A|204
8XT0|1|S1|A|205

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein bS16m

Chain Sb

Small ribosomal subunit protein mS26