IL_8XT0_068

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

8XT0|1|S1|C|257, 8XT0|1|S1|C|259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT0_068 not in the Motif Atlas

Homologous match to IL_5J7L_025

Geometric discrepancy: 0.3635

The information below is about IL_5J7L_025

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8XT0|1|S1|G|240
8XT0|1|S1|U|241
8XT0|1|S1|G|242
8XT0|1|S1|C|243
8XT0|1|S1|C|244
8XT0|1|S1|A|245
8XT0|1|S1|G|246
*
8XT0|1|S1|C|253
8XT0|1|S1|G|254
8XT0|1|S1|G|255
8XT0|1|S1|U|256
8XT0|1|S1|C|257
8XT0|1|S1|A|258
8XT0|1|S1|C|259
8XT0|1|S1|A|260
8XT0|1|S1|C|261

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein uS5m

Chain SL

Small ribosomal subunit protein uS12m

Chain Si

Small ribosomal subunit protein mS33