IL_8XT0_076

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT0_076 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.1637

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8XT0|1|S1|A|420
8XT0|1|S1|A|421
8XT0|1|S1|A|422
8XT0|1|S1|C|423
8XT0|1|S1|U|424
*
8XT0|1|S1|A|440
8XT0|1|S1|C|441
8XT0|1|S1|U|442
8XT0|1|S1|A|443
8XT0|1|S1|U|444

Current chains

Chain S1

12s rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain SK

Small ribosomal subunit protein uS11m

Chain SW

Small ribosomal subunit protein bS21m