IL_8XT0_093

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT0_093 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.1328

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8XT0|1|S1|G|842
8XT0|1|S1|U|843
8XT0|1|S1|C|844
*
8XT0|1|S1|G|912
8XT0|1|S1|U|913
8XT0|1|S1|C|914

Current chains

Chain S1

12s rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain Sn

Small ribosomal subunit protein mS38