IL_8XT0_094

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACCC*GACAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT0|1|S1|C|844
8XT0|1|S1|A|845
8XT0|1|S1|C|846
8XT0|1|S1|C|847
8XT0|1|S1|C|848
*
8XT0|1|S1|G|907
8XT0|1|S1|A|908
8XT0|1|S1|C|909
8XT0|1|S1|A|910
8XT0|1|S1|A|911
8XT0|1|S1|G|912

Current chains

Chain S1

12s rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain SL

Small ribosomal subunit protein uS12m

Chain Sn

Small ribosomal subunit protein mS38