IL_8XT0_095

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAGU*AUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT0_095 not in the Motif Atlas

Geometric match to IL_2R8S_002

Geometric discrepancy: 0.3024

The information below is about IL_2R8S_002

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8XT0|1|S1|C|853
8XT0|1|S1|A|854
8XT0|1|S1|A|855
8XT0|1|S1|G|856
8XT0|1|S1|U|857
*
8XT0|1|S1|A|899
8XT0|1|S1|U|900
8XT0|1|S1|A|901
8XT0|1|S1|G|902

Current chains

Chain S1

12s rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain LN

Large ribosomal subunit protein uL14m

Chain Sn

Small ribosomal subunit protein mS38