IL_8XT0_096

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT0_096 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.1455

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8XT0|1|S1|A|860
8XT0|1|S1|C|861
8XT0|1|S1|U|862
8XT0|1|S1|U|863
*
8XT0|1|S1|A|893
8XT0|1|S1|U|894
8XT0|1|S1|U|895
8XT0|1|S1|U|896

Current chains

Chain S1

12s rRNA

Nearby chains

Chain LN

Large ribosomal subunit protein uL14m

Chain Sj

Small ribosomal subunit protein mS34

Chain Sn

Small ribosomal subunit protein mS38