IL_8XT2_011

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_011 not in the Motif Atlas

Homologous match to IL_7RQB_022

Geometric discrepancy: 0.1295

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

8XT2|1|L1|C|278
8XT2|1|L1|G|279
8XT2|1|L1|U|280
8XT2|1|L1|C|281
*
8XT2|1|L1|G|296
8XT2|1|L1|U|297
8XT2|1|L1|G|298

Current chains

Chain L1

16s rRNA

Nearby chains

Chain Lh

Large ribosomal subunit protein bL34m