IL_8XT2_025
3D structure
- PDB id
- 8XT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 8XT2|1|L1|G|985
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT2_025 not in the Motif Atlas
- Geometric match to IL_5J7L_307
- Geometric discrepancy: 0.082
- The information below is about IL_5J7L_307
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_76758.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
8XT2|1|L1|A|803
8XT2|1|L1|C|804
8XT2|1|L1|U|805
8XT2|1|L1|C|806
8XT2|1|L1|G|807
8XT2|1|L1|G|808
*
8XT2|1|L1|C|983
8XT2|1|L1|U|984
8XT2|1|L1|G|985
8XT2|1|L1|U|986
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL3m
- Chain LN
- Large ribosomal subunit protein uL14m
- Chain LS
- Large ribosomal subunit protein bL19m
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