IL_8XT2_031

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUAAUCACUUG*CCUG

Length

16 nucleotides

Bulged bases

8XT2|1|L1|A|931, 8XT2|1|L1|U|932, 8XT2|1|L1|U|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT2|1|L1|C|927
8XT2|1|L1|A|928
8XT2|1|L1|U|929
8XT2|1|L1|A|930
8XT2|1|L1|A|931
8XT2|1|L1|U|932
8XT2|1|L1|C|933
8XT2|1|L1|A|934
8XT2|1|L1|C|935
8XT2|1|L1|U|936
8XT2|1|L1|U|937
8XT2|1|L1|G|938
*
8XT2|1|L1|C|954
8XT2|1|L1|C|955
8XT2|1|L1|U|956
8XT2|1|L1|G|957

Current chains

Chain L1

16s rRNA

Nearby chains

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain Sn

Small ribosomal subunit protein mS38