IL_8XT2_038
3D structure
- PDB id
- 8XT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAAG*CAAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT2_038 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.2174
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8XT2|1|L1|C|1186
8XT2|1|L1|U|1187
8XT2|1|L1|A|1188
8XT2|1|L1|A|1189
8XT2|1|L1|G|1190
*
8XT2|1|L1|C|1202
8XT2|1|L1|A|1203
8XT2|1|L1|A|1204
8XT2|1|L1|A|1205
8XT2|1|L1|G|1206
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain L7
- Large ribosomal subunit protein mL62
- Chain LR
- Mitochondrial ribosomal protein L18, isoform CRA_b
- Chain La
- Large ribosomal subunit protein bL27m
- Chain Lg
- Large ribosomal subunit protein bL33m
- Chain Li
- Large ribosomal subunit protein bL35m
- Chain Ll
- Large ribosomal subunit protein mL38
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