IL_8XT2_039

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_039 not in the Motif Atlas

Homologous match to IL_4WF9_089

Geometric discrepancy: 0.1236

The information below is about IL_4WF9_089

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

8XT2|1|L1|A|1270
8XT2|1|L1|G|1271
*
8XT2|1|L1|C|1315
8XT2|1|L1|C|1316
8XT2|1|L1|U|1317

Current chains

Chain L1

16s rRNA

Nearby chains

Chain L6

Large ribosomal subunit protein mL63

Chain LC

Large ribosomal subunit protein uL3m