IL_8XT2_049

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8XT2|1|L1|A|1419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_049 not in the Motif Atlas

Homologous match to IL_5J7L_344

Geometric discrepancy: 0.4224

The information below is about IL_5J7L_344

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8XT2|1|L1|C|1408
8XT2|1|L1|G|1409
*
8XT2|1|L1|C|1418
8XT2|1|L1|A|1419
8XT2|1|L1|G|1420

Current chains

Chain L1

16s rRNA

Nearby chains