IL_8XT2_053
3D structure
- PDB id
- 8XT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCA*UAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT2_053 not in the Motif Atlas
- Geometric match to IL_4WF9_042
- Geometric discrepancy: 0.1015
- The information below is about IL_4WF9_042
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 215
Unit IDs
8XT2|1|L2|C|26
8XT2|1|L2|C|27
8XT2|1|L2|A|28
*
8XT2|1|L2|U|38
8XT2|1|L2|A|39
8XT2|1|L2|G|40
Current chains
- Chain L2
- Val tRNA
Nearby chains
- Chain L5
- Large ribosomal subunit protein mL55
- Chain LR
- Mitochondrial ribosomal protein L18, isoform CRA_b
- Chain Ll
- Large ribosomal subunit protein mL38
- Chain Ln
- Large ribosomal subunit protein mL40
- Chain Lt
- Large ribosomal subunit protein mL46
- Chain Lv
- Large ribosomal subunit protein mL48
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