IL_8XT2_055

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAG*UCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_055 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2074

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8XT2|1|S1|U|27
8XT2|1|S1|A|28
8XT2|1|S1|G|29
*
8XT2|1|S1|U|274
8XT2|1|S1|C|275
8XT2|1|S1|A|276

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SL

Small ribosomal subunit protein uS12m

Chain SS

Small ribosomal subunit protein mS40