IL_8XT2_064

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUU*AA

Length

5 nucleotides

Bulged bases

8XT2|1|S1|U|184

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_064 not in the Motif Atlas

Geometric match to IL_5TBW_093

Geometric discrepancy: 0.2925

The information below is about IL_5TBW_093

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8XT2|1|S1|U|183
8XT2|1|S1|U|184
8XT2|1|S1|U|185
*
8XT2|1|S1|A|208
8XT2|1|S1|A|209

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein bS16m

Chain Sa

Small ribosomal subunit protein mS25