IL_8XT2_069

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8XT2|1|S1|A|291

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_069 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1471

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8XT2|1|S1|C|288
8XT2|1|S1|G|289
8XT2|1|S1|U|290
8XT2|1|S1|A|291
8XT2|1|S1|A|292
8XT2|1|S1|A|293
8XT2|1|S1|G|294
*
8XT2|1|S1|C|486
8XT2|1|S1|G|487

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein uS5m

Chain SL

Small ribosomal subunit protein uS12m

Chain SQ

Small ribosomal subunit protein uS17m

Chain Sn

Small ribosomal subunit protein mS38