IL_8XT2_072

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_072 not in the Motif Atlas

Geometric match to IL_4LFB_010

Geometric discrepancy: 0.1203

The information below is about IL_4LFB_010

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8XT2|1|S1|A|335
8XT2|1|S1|C|336
8XT2|1|S1|C|337
*
8XT2|1|S1|G|357
8XT2|1|S1|U|358
8XT2|1|S1|U|359

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein bS6m

Chain SK

Small ribosomal subunit protein uS11m

Chain SW

Small ribosomal subunit protein bS21m