IL_8XT2_074

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_074 not in the Motif Atlas

Geometric match to IL_3WBM_004

Geometric discrepancy: 0.3353

The information below is about IL_3WBM_004

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_18188.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8XT2|1|S1|C|373
8XT2|1|S1|U|374
8XT2|1|S1|A|375
*
8XT2|1|S1|U|382
8XT2|1|S1|G|383

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein bS6m

Chain ST

Small ribosomal subunit protein bS18m

Chain SW

Small ribosomal subunit protein bS21m

Chain Sm

Small ribosomal subunit protein mS37