IL_8XT2_077

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_077 not in the Motif Atlas

Geometric match to IL_1Z7F_002

Geometric discrepancy: 0.1129

The information below is about IL_1Z7F_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8XT2|1|S1|A|462
8XT2|1|S1|A|463
8XT2|1|S1|C|464
*
8XT2|1|S1|G|483
8XT2|1|S1|C|484
8XT2|1|S1|U|485

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein uS5m

Chain SL

Small ribosomal subunit protein uS12m

Chain SQ

Small ribosomal subunit protein uS17m

Chain Sa

Small ribosomal subunit protein mS25

Chain Sm

Small ribosomal subunit protein mS37