IL_8XT2_080

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGU*GC

Length

5 nucleotides

Bulged bases

8XT2|1|S1|G|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_080 not in the Motif Atlas

Homologous match to IL_6CZR_148

Geometric discrepancy: 0.4079

The information below is about IL_6CZR_148

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

8XT2|1|S1|G|531
8XT2|1|S1|G|532
8XT2|1|S1|U|533
*
8XT2|1|S1|G|827
8XT2|1|S1|C|828

Current chains

Chain S1

12s rRNA

Nearby chains

Chain Sm

Small ribosomal subunit protein mS37