IL_8XT2_083

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGCUCAGC*GCCCAUG

Length

17 nucleotides

Bulged bases

8XT2|1|S1|C|603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT2|1|S1|C|597
8XT2|1|S1|U|598
8XT2|1|S1|U|599
8XT2|1|S1|G|600
8XT2|1|S1|C|601
8XT2|1|S1|U|602
8XT2|1|S1|C|603
8XT2|1|S1|A|604
8XT2|1|S1|G|605
8XT2|1|S1|C|606
*
8XT2|1|S1|G|692
8XT2|1|S1|C|693
8XT2|1|S1|C|694
8XT2|1|S1|C|695
8XT2|1|S1|A|696
8XT2|1|S1|U|697
8XT2|1|S1|G|698

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein uS5m

Chain SN

Small ribosomal subunit protein uS14m

Chain Si

Small ribosomal subunit protein mS33