IL_8XT2_085
3D structure
- PDB id
- 8XT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAUAC*GUG
- Length
- 8 nucleotides
- Bulged bases
- 8XT2|1|S1|U|612
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT2_085 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1735
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8XT2|1|S1|U|610
8XT2|1|S1|A|611
8XT2|1|S1|U|612
8XT2|1|S1|A|613
8XT2|1|S1|C|614
*
8XT2|1|S1|G|687
8XT2|1|S1|U|688
8XT2|1|S1|G|689
Current chains
- Chain S1
- 12s rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein uS5m
- Chain SJ
- Small ribosomal subunit protein uS10m
- Chain SN
- Small ribosomal subunit protein uS14m
- Chain SZ
- Small ribosomal subunit protein uS3m
- Chain Si
- Small ribosomal subunit protein mS33
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