IL_8XT2_088

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_088 not in the Motif Atlas

Geometric match to IL_5J7L_050

Geometric discrepancy: 0.1411

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8XT2|1|S1|A|619
8XT2|1|S1|U|620
8XT2|1|S1|C|621
*
8XT2|1|S1|G|676
8XT2|1|S1|U|677
8XT2|1|S1|U|678

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein uS5m

Chain SI

Small ribosomal subunit protein uS9m

Chain SJ

Small ribosomal subunit protein uS10m

Chain SN

Small ribosomal subunit protein uS14m

Chain SZ

Small ribosomal subunit protein uS3m