IL_8XT2_089

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAA*UAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_089 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.1549

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8XT2|1|S1|C|627
8XT2|1|S1|A|628
8XT2|1|S1|A|629
8XT2|1|S1|A|630
*
8XT2|1|S1|U|651
8XT2|1|S1|A|652
8XT2|1|S1|A|653
8XT2|1|S1|G|654

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SB

Small ribosomal subunit protein uS2m

Chain SE

Small ribosomal subunit protein uS5m

Chain SI

Small ribosomal subunit protein uS9m

Chain SZ

Small ribosomal subunit protein uS3m

Chain Sk

Small ribosomal subunit protein mS35