IL_8XU8_016

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCC*GUGC

Length

7 nucleotides

Bulged bases

8XU8|1|2|U|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_016 not in the Motif Atlas

Geometric match to IL_6M6R_002

Geometric discrepancy: 0.2167

The information below is about IL_6M6R_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8XU8|1|2|G|274
8XU8|1|2|C|275
8XU8|1|2|C|276
*
8XU8|1|2|G|279
8XU8|1|2|U|280
8XU8|1|2|G|281
8XU8|1|2|C|282

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain Y

Large ribosomal subunit protein eL24A