IL_8XU8_025

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUACAGGGCC*GUCUUGUAAU

Length

20 nucleotides

Bulged bases

8XU8|1|2|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XU8|1|2|A|481
8XU8|1|2|U|482
8XU8|1|2|A|483
8XU8|1|2|C|484
8XU8|1|2|A|485
8XU8|1|2|G|486
8XU8|1|2|G|487
8XU8|1|2|G|488
8XU8|1|2|C|489
8XU8|1|2|C|490
*
8XU8|1|2|G|498
8XU8|1|2|U|499
8XU8|1|2|C|500
8XU8|1|2|U|501
8XU8|1|2|U|502
8XU8|1|2|G|503
8XU8|1|2|U|504
8XU8|1|2|A|505
8XU8|1|2|A|506
8XU8|1|2|U|507

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SW

Small ribosomal subunit protein uS4A

Chain Sg

Small ribosomal subunit protein eS30A

Chain x

Elongation factor 2