3D structure

PDB id
8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
ACA*UU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8XU8_029 not in the Motif Atlas
Homologous match to IL_8P9A_401
Geometric discrepancy: 0.2801
The information below is about IL_8P9A_401
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_34520.1
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
58

Unit IDs

8XU8|1|2|A|518
8XU8|1|2|C|519
8XU8|1|2|A|520
*
8XU8|1|2|U|532
8XU8|1|2|U|533

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SW
Small ribosomal subunit protein uS4A
Chain Sd
Small ribosomal subunit protein eS24A
Chain x
Elongation factor 2

Coloring options:


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