IL_8XU8_029
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- ACA*UU
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_029 not in the Motif Atlas
- Homologous match to IL_8P9A_401
- Geometric discrepancy: 0.2801
- The information below is about IL_8P9A_401
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_34520.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 58
Unit IDs
8XU8|1|2|A|518
8XU8|1|2|C|519
8XU8|1|2|A|520
*
8XU8|1|2|U|532
8XU8|1|2|U|533
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sd
- Small ribosomal subunit protein eS24A
- Chain x
- Elongation factor 2
Coloring options: