IL_8XU8_039
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_039 not in the Motif Atlas
- Homologous match to IL_8C3A_503
- Geometric discrepancy: 0.4013
- The information below is about IL_8C3A_503
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44416.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8XU8|1|2|G|751
8XU8|1|2|A|752
8XU8|1|2|A|753
8XU8|1|2|A|754
8XU8|1|2|A|755
8XU8|1|2|A|756
8XU8|1|2|A|757
8XU8|1|2|U|758
8XU8|1|2|U|759
*
8XU8|1|2|A|791
8XU8|1|2|U|792
8XU8|1|2|A|793
8XU8|1|2|U|794
8XU8|1|2|U|795
8XU8|1|2|A|796
8XU8|1|2|G|797
8XU8|1|2|C|798
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain Sb
- Small ribosomal subunit protein uS8A
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