IL_8XU8_044
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUAUU*AAGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_044 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.3048
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8XU8|1|2|G|885
8XU8|1|2|U|886
8XU8|1|2|A|887
8XU8|1|2|U|888
8XU8|1|2|U|889
*
8XU8|1|2|A|923
8XU8|1|2|A|924
8XU8|1|2|G|925
8XU8|1|2|A|926
8XU8|1|2|C|927
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2A
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SZ
- Small ribosomal subunit protein uS11B
- Chain Se
- Small ribosomal subunit protein eS26A
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