IL_8XU8_048

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGA*UCUUUGG

Length

10 nucleotides

Bulged bases

8XU8|1|2|C|1096, 8XU8|1|2|U|1098, 8XU8|1|2|G|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_048 not in the Motif Atlas

Homologous match to IL_8C3A_443

Geometric discrepancy: 0.1947

The information below is about IL_8C3A_443

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47729.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8XU8|1|2|C|1034
8XU8|1|2|G|1035
8XU8|1|2|A|1036
*
8XU8|1|2|U|1095
8XU8|1|2|C|1096
8XU8|1|2|U|1097
8XU8|1|2|U|1098
8XU8|1|2|U|1099
8XU8|1|2|G|1100
8XU8|1|2|G|1101

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein uS5

Chain SX

Small ribosomal subunit protein uS17A

Chain SY

Small ribosomal subunit protein uS15

Chain Sb

Small ribosomal subunit protein uS8A

Chain Sc

Small ribosomal subunit protein uS12A