IL_8XU8_050

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8XU8|1|2|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_050 not in the Motif Atlas

Homologous match to IL_8P9A_427

Geometric discrepancy: 0.4624

The information below is about IL_8P9A_427

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8XU8|1|2|G|1051
8XU8|1|2|U|1052
8XU8|1|2|G|1053
*
8XU8|1|2|C|1066
8XU8|1|2|C|1067

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS2A

Chain SQ

Small ribosomal subunit protein eS1A

Chain Sf

Small ribosomal subunit protein eS27A