IL_8XU8_051

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGUAUGG*CUGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XU8|1|2|G|1111
8XU8|1|2|G|1112
8XU8|1|2|A|1113
8XU8|1|2|G|1114
8XU8|1|2|U|1115
8XU8|1|2|A|1116
8XU8|1|2|U|1117
8XU8|1|2|G|1118
8XU8|1|2|G|1119
*
8XU8|1|2|C|1128
8XU8|1|2|U|1129
8XU8|1|2|G|1130
8XU8|1|2|A|1131
8XU8|1|2|A|1132
8XU8|1|2|A|1133
8XU8|1|2|C|1134

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Sc

Small ribosomal subunit protein uS12A

Chain p

Large ribosomal subunit protein eL41A