IL_8XU8_064
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 8XU8|1|2|A|1427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_064 not in the Motif Atlas
- Homologous match to IL_8C3A_458
- Geometric discrepancy: 0.1256
- The information below is about IL_8C3A_458
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
8XU8|1|2|C|1280
8XU8|1|2|G|1281
*
8XU8|1|2|C|1426
8XU8|1|2|A|1427
8XU8|1|2|G|1428
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SK
- Small ribosomal subunit protein eS25A
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SR
- Small ribosomal subunit protein uS5
- Chain s
- Transfer RNA; tRNA
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