IL_8XU8_076

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8XU8|1|2|C|1637, 8XU8|1|2|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_076 not in the Motif Atlas

Homologous match to IL_8P9A_452

Geometric discrepancy: 0.189

The information below is about IL_8P9A_452

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8XU8|1|2|C|1636
8XU8|1|2|C|1637
8XU8|1|2|G|1638
*
8XU8|1|2|C|1764
8XU8|1|2|A|1765
8XU8|1|2|A|1766
8XU8|1|2|G|1767

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SK

Small ribosomal subunit protein eS25A

Chain Se

Small ribosomal subunit protein eS26A

Chain t

Transfer RNA; tRNA