IL_8XU8_079

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCUA*UAAAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XU8|1|2|C|1644
8XU8|1|2|G|1645
8XU8|1|2|C|1646
8XU8|1|2|U|1647
8XU8|1|2|A|1648
*
8XU8|1|2|U|1752
8XU8|1|2|A|1753
8XU8|1|2|A|1754
8XU8|1|2|A|1755
8XU8|1|2|A|1756
8XU8|1|2|G|1757

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Sc

Small ribosomal subunit protein uS12A

Chain Sg

Small ribosomal subunit protein eS30A

Chain p

Large ribosomal subunit protein eL41A

Chain s

Transfer RNA; tRNA